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datascience_ibm_course

A sharing point for my work in IBM's Data Science courses on Coursera

discrete_cytometry

Analyzing files from the Influx flow cytometer.

latex_templates

Templates for LaTeX formatting

matrix_model_hynes_2015

Realization of the Sosik et al (2003) size-based matrix model adapted for Prochlorococcus in Hynes et al (2015)

matrix_model_matlab

Prepping SeaFlow data and using it in the Hunter-Cevera 2-population matrix growth model

ohw22-proj-flow-cytometry

Unsupervised clustering of flow cytometry data.

ohw22_nw_git

Git exercise for OHW22 NW satetllite

popcycle

Popcycle is an R package that processes continuous flow cytometry data from SeaFlow repository. The software is built to perform real-time data analysis and be operated remotely via satellite connection

pro_ibm

An individual-based model simulating the cell cycle of the marine cyanobacterium Prochlorococcus.

seaflow-curation

Contains the function and parameters to flag outliers in SeaFlow data.

seaflow-cytogrammovie

An R script that makes hourly cytograms and maps from a cruise to stitch into a movie.

seaflow-filter

Adding SCOPE-PARAGONII

seaflow-gating

seaflow-multifilter

Filter tables and filter plan tables for SeaFlow data that require multiple filter parameters.

seaflow-outlier

seaflow-sfl

SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.

seaflow_aloha

Scripts and data used in the analysis for the SeaFlow at Station ALOHA manuscript.

seaflow_cruise_report

knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.

testrepo

winter2024

Test for using tinyTeX and R