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access-pipeline

cfDNA Sequencing Pipeline with UMI

access_sv_local

bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

biopython

Official git repository for Biopython (converted from CVS)

cancer-genomics-workflow

MGI's CWL Cancer Pipelines.

cnapp

CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-friendly interface. The software uses segmented data from either aCGH, SNP-array, whole-exome sequencing or whole-genome sequencing to assess sample profiles and CNA levels, establishing associations with molecular and clinical features. CNApp has three main sections: Re-Seg & Score, Region profile and Classifier model

computer-science-flash-cards

Mini website for testing both general CS knowledge and enforce coding practice and common algorithm/data structure memorization.

concept-to-clinic

ALCF Concept to Clinic Challenge

covidclinicaldata

Coronavirus Disease 2019 (COVID-19) Clinical Data Repository

cufflinks

deepsvr

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

detectron

FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.

edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

facets-suite

Utility functions for FACETS

facets2n

Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing. Package created to test FACETS with both matched and unmatched normal.

gallery

Gallery of ggplot2 extensions

gameofthrones

Colour Palette for R inspired in the TV show Game of Thrones

genotype_variants

Project to genotype SNV, INDEL and SV.

getbasecountsmultisample

gym

A toolkit for developing and comparing reinforcement learning algorithms.

hotspots

Identifying recurrent mutations in cancer

iannotatesv

iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.

icallsv

A Framework to call Structural Variants from NGS based datasets

kallisto

Near-optimal RNA-Seq quantification

linkedin-skill-assessments-quizzes

Full reference of LinkedIn answers 2021 for skill assessments, LinkedIn test, questions and answers (aws-lambda, rest-api, javascript, react, git, html, jquery, mongodb, java, css, python, machine-learning, power-point) linkedin excel test lösungen, linkedin machine learning test

lz

Go engine with no human-provided knowledge, modeled after the AlphaGo Zero paper.

madewithml

Learn how to responsibly deliver value with ML.