ampliconsuite Goto Github PK
Name: AmpliconSuite
Type: Organization
Bio: A collection of related tools for studying focal amplifications in cancer genomes
AmpliconSuite's Projects
.github
Organization documentation
ampliconarchitect
Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.
ampliconclassifier
Classify output of AmpliconArchitect to detect types of focal amplifications present
ampliconreconstructorom
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
ampliconrepository
Website to host AmpliconSuite outputs, including AA outputs and resulting focal amplification classifications, such as ecDNA.
ampliconrepository-docs
ampliconsuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
ampliconsuiteaggregator
Aggregates the results from AmpliconSuite for upload to AmpliconRepository.org
bioconda-recipes
Conda recipes for the bioconda channel.
coral
Complete Reconstruction of Amplifications with Long reads
cycleviz
Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.
ecsimulator
Simulate ecDNA structures with user-specified properties.
genepatternfiledownloader
Utility script for downloading bam (or other file types) from GenePattern
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