ammaraziz Goto Github PK
Name: Ammar Aziz
Type: User
Company: Victorian Infectious Disease Reference Laboratory (VIDRL)
Name: Ammar Aziz
Type: User
Company: Victorian Infectious Disease Reference Laboratory (VIDRL)
Estimating epistatic interactions from SARS-CoV-2 genomes
Assembly statistic visualisation
Assign influenza HA clade from consensus fasta
Pipeline components for real-time phylodynamic analysis
Web app for visualizing pathogen evolution
Simple CLI argument parsing template for a stand alone bash script
Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz
Conda recipes for the bioconda channel.
Benchmarking fastq compression with generic (mature) compression algorithms
Custom conda IRMA recipe
Chlamydia trachomatis Genome Assembly Pipeline
Color Universal Design colourblind-friendly python matplotlib palette
Lazy detect dependencies in workflows
Extract reads from kraken quickly and easily
Interface to Fuzee API
Programmatically interact with the GISAID database.
A snakemake pipeline for classifying (kraken), de novo assemblying (haploflow) and annotating (abricate) pipeline
A cheat sheet for if I am somehow incapacitated.
jev analysis pipelines for ncbi ingestion, nextclade dataset creation and phylo analysis
custom metaphlan pipeline for PBS schedular
Variant Calling Pipeline for Haploid Mixture Analysis
A monkeypox virus (MPXV) assembly pipeline using Nextflow for host-removal, reference-based assembly, and generation of sequence quality metrics for Illumina paired-end data using a shotgun metagenomic sequencing approach.
Monkeypox analysis workflow for ARTIC and TWIST
Parse multiple sequence alignment out put files and calculate Shannon's entropy for each column of the alignment
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.