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aligner_benchmark

anschutz_python

Beginner Python Course

as-quant

Quantitation and visualization of differential alternative splicing events

awesome-cheatsheets

📚 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.

aws-machine-learning-scholarship-program

This project focuses on best practices of object-oriented programming, AWS AI Services, AWS DeepLens, AWS DeepRacer, and AWS DeepComposer.

bioinfo-notebook

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

bioinformatics-workshops

Workshops presented by the Gladstone Bioinformatics Core

biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

biotools

A list of useful bioinformatics resources

bisbee

alternative splicing analysis pipeline

cancer_notes

A continually expanding collection of cancer genomics notes and data

consexpression

Tool for RNA-Seq analysis.

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

erccdashboard

This is the git repository for erccdashboard on Bioconductor. Contributions: http://www.nist.gov/mml/bbd/erccdashboard.cfm, https://github.com/usnistgov/erccdashboard, http://tinyurl.com/erccsrm. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=erccdashboard. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/erccdashboard

galaxy-hub

Galaxy Community Hub

ggr-cwl

CWL tools and workflows for GGR

ikarus

jtm-rscript-assignatures

R script for manuscript "Exploration of predictive and prognostic alternative splicing signatures in lung adenocarcinoma using machine learning methods"

learn-wdl

Educational materials for learning WDL

learnanalytics-doingmachinelearningwithazuremlstudio

This is a public repository that contains training materials on Doing Machine Learning with Azure ML

mibc-predictive-models

This repository includes generated data and codes for paper: 'Predictive models of response to neoadjuvant chemotherapy in muscle-invasive bladder cancer based on nuclear morphology and tissue architecture'.'

miniwdl

Workflow Description Language developer tools & local runner

molmodsim-md-theory-lesson-novice

Some practical theoretic background needed for running MD simulations

mountainclimber

nextflow

A DSL for data-driven computational pipelines

nextflow-tutorial

Nextflow training material for introductory tutorial

ngi-rnaseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

open-enrollment-classes-introduction-to-github

open-enrollment-classes-introduction-to-github created by GitHub Classroom

pancanatlas_code_public

Public repository containing research code for the TCGA PanCanAtlas Splicing project

pegasas

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)