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Adam Lowet's Projects

caiman icon caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

deeplabcluster icon deeplabcluster

Quick startup to using the FAS cluster to train, evaluate, and analyze video with DeepLabCut

deeplabcut icon deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals

facemap icon facemap

matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

iblapps icon iblapps

pyqt5 dependent applications for IBL sessions

kilosort icon kilosort

Fast spike sorting with drift correction for up to a thousand channels

py-gpfa icon py-gpfa

Python implementation of Gaussian Process Factor Analysis

spikeextractors icon spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

spikesorters icon spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

stats320 icon stats320

STATS320: Statistical Methods for Neural Data Analysis

suite2p icon suite2p

cell detection in calcium imaging recordings

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