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Name: Ali Pirani
Type: User
Company: University of Michigan Health System
Bio: Bioinfo-Comput Biologist Inter
Location: Ann Arbor
Name: Ali Pirani
Type: User
Company: University of Michigan Health System
Bio: Bioinfo-Comput Biologist Inter
Location: Ann Arbor
Conda recipes for the bioconda channel.
Short lessons from FAS Informatics coffee hour
Micro 612 genomics workshop
This is an archived repository of 2017 Micro 612 genomics workshop.
This Snakemake pipeline implements the GATK best-practices workflow
compare multiple fasta files using nucmer and extract aligned fragments
Official code repository for GATK versions 4 and up
Calculate Peak to Trough ratio (PTR) from sequencing data.
Growth-rate-analysis is a Snakemake workflow to calculate peak to through ratio (PTR - ratio of copy numbers at origin of replication to terminus) from mapped reads coverage.
A Snakemake workflow to basecall, quality control and assemble Nanopore data.
R package to perform data pre-processing for more informative bacterial GWAS
Generate Coverage, Quality and Contamination metrics for Sequence data.
Runs Quality Control workflow on Illumina WGS data
(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.
Getting started with Snakemake workflows for automated bioinformatics analysis.
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Modular workflow for Microbial Variant Calling and SNP diagnostics.
🎓 Hugo Academic Theme 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
Scripts to generate Strainest Database.
Variant Calling Pipeline
The scripts in this directory analyses various results generated during variant calling analysis and creates diagnostic plots for exploring variants that were filtered out during the variant filteration step. Generates core SNP vcf and consensus file.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.