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alexpron.github.io

article_central_sulcus_connectivity

Code used for study design, MRI data processing, statistical analysis and figures in the article U-shape short-range extrinsic connectivity organisation around the human central sulcus

brainvisa-diffuse

cortexode

The official implementation of CortexODE

datalad-ukbiobank

Resources for working with UKBiobank as a DataLad dataset

datalad-xnat

Track XNAT projects with DataLad

dhcp-dl-neonatal

The dHCP deep learning-based neonatal structural MRI processing pipeline.

dhcp-structural-pipeline

structural analysis of neonatal brain MRI scans

ds_prep

All the scripts to prepare the Courtois-Neuromod dataset

fetpype

Pipeline for processing MRI acquired in vivo in Human fetus

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

lectures-labs

Slides and Jupyter notebooks for the Deep Learning lectures at M2 Data Science Université Paris Saclay

mrproc

Magnetic Resonance Imaging data processing pipelines with a strong emphasis on the diffusion weighted MRI (DWI) modality and tractogram estimation

narps_open_pipelines

A codebase reproducing the 70 pipelines of the NARPS study (Botvinik-Nezer et al., 2020) shared as an open resource for the community.

niftymic

NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.

nisnap

Display segmentation results over MRI scans in Jupyter notebooks.

nnunet

sctva

python and bash scripts to study structural connectivity of temporal voice areas

shanoir-ng

Shanoir-NG (SHAring iN vivO Imaging Resources - Next Generation)

shanoir_downloader

Scripts to download, check and anonymize datasets

slam

Surface anaLysis And Modeling

slamviz

Neuroanatomical Surfaces Visualization