alexg9010 Goto Github PK

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

bash-powerline

Powerline-style Bash prompt in pure Bash script. See also https://github.com/riobard/zsh-powerline

bimsbbioinfo.github.io

website for the platform

bioconductor_codespaces

Testing scripts for Bioconductor codespaces

bioconductor_docker

Docker Containers for Bioconductor - NEW!

bookdown

Authoring Books and Technical Documents with R Markdown

bwa-meth

fast and accurate alignment of BS-Seq reads

centipede.tutorial

:bug: How to use CENTIPEDE to determine if a transcription factor is bound.

chatgpt-prompt-engineering

Jupyter code notebooks of "ChatGPT Prompt Engineering for Developers" by DeepLearning.AI and OpenAI.

cookiecutter-snakemake-analysis-pipeline

A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.

cpc2_standalone

Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

debug_rcpp

Short introduction how to debug rcpp code inside a package

derfinder

Fast differential expression analysis of RNA-seq data at base-pair resolution

dotfiles

Manage system config files / dotfiles

enrichr

An R interface to enrichR

evil

The extensible vi layer for Emacs.

fastseg

This is the github mirror for the R package fastseg

files.matthuisman.nz

Various files linked to from matthuisman.nz

flair

Full-Length Alternative Isoform analysis of RNA

genomation

R package for genomic feature analysis and visualization

guix_helpers

headshots-starter

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

isoformswitchanalyzer

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

makengsnake

makewgbsnake

Snakemake pipeline for WGBS analysis (private repository)

methylkit

R package for DNA methylation analysis

minion_qc

Quality control for MinION sequencing data

molpy

periodic-table