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2nifti

Useful scripts for image conversion

accl

Accelerated Collective Communication Library: MPI-like communication operations for Xilinx Alveo accelerators

albertozeni.github.io

bella

BELLA: a computationally-efficient and highly-accurate long-read to long-read aligner and overlapper.

bowtie

An ultrafast memory-efficient short read aligner

fi2021-esercizi-vari

fondamenti2122

Esercizi risolti durante le esercitazioni del corso di Fondamenti di Informatica del Polimi AA2122

gelato

Gelato: a multi-reference genome assembler to enhance variant calling sensitivity

gemx

Matrix Operation Library for FPGA https://xilinx.github.io/gemx/

gpu-benches

collection of benchmarks to measure basic GPU capabilities

gpu101-projects

Repository containing the starting programs for the GPU101 PiA Course Project

gpu_course_colab

Repository with useful scripts for CUDA C/C++ on Colab

hpcg

Official HPCG benchmark source code

hpcg_fpga

ksw2

Global alignment and alignment extension

ksw2z-fpga

High-Performance FPGA implementation of the KSW2-z algorithm

logan

LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mixbench

A GPU benchmark tool for evaluating GPUs and CPUs on mixed operational intensity kernels (CUDA, OpenCL, HIP, SYCL, OpenMP)

pairhmm

Optimization of a Haplotype PairHMM class for GPU processing

powerenjoy

Repository for the assignments of the course Software Engineering 2

starlight

Starlight: A Kernel Optimizer for GPU Processing

xdropxohw-public

High-Performance FPGA implementation of the X-drop algorithm

xohw21-darwin-public

xrt

Xilinx Run Time for FPGA

zluda

CUDA on AMD GPUs