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Alan Cleary's Projects

cdawg-index-cfg icon cdawg-index-cfg

Uses the CDAWG as an index for pattern matching on CFGs representing grammar-compressed strings

fras icon fras

A modified version of the folklore algorithm for random access to grammar-compressed strings that works on any straight-line program

gcv icon gcv

Federating genomes with love (and functional annotations => synteny)

hyena-dna icon hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

microservices icon microservices

A collection of microservices developed and maintained by the Legume Information System

mr-cfg icon mr-cfg

MR-CFG builds a straight-line grammar using LCP-intervals

taxon-symbology icon taxon-symbology

Javascript library for consistent coloring of visualizations by genus & species.

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