Alan Cleary's Projects
A fork of the Pixyll Jekyll theme that I use for my personal website
Uses the CDAWG as an index for pattern matching on CFGs representing grammar-compressed strings
A modified version of the folklore algorithm for random access to grammar-compressed strings that works on any straight-line program
Federating genomes with love (and functional annotations => synteny)
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
A collection of microservices developed and maintained by the Legume Information System
MR-CFG builds a straight-line grammar using LCP-intervals
Javascript library for consistent coloring of visualizations by genus & species.
Keyboard firmwares for Atmel AVR and Cortex-M
An extended version of the Snazzy color scheme for Neovim