ahmedelhosseiny Goto Github PK
Name: Ahmed El Hosseiny
Type: User
Company: The American University in Cairo
Bio: Bioinformatics Technical Lead
Twitter: AhmdAbdelrhman
Location: Egypt
Blog: aucegypt.edu
Name: Ahmed El Hosseiny
Type: User
Company: The American University in Cairo
Bio: Bioinformatics Technical Lead
Twitter: AhmdAbdelrhman
Location: Egypt
Blog: aucegypt.edu
AcRanker is a machine learning system developed in python that ranks proteins in a proteome as per their Anti-CRISPR tendencies predicted using sequence features.
AcrFinder, a tool for automated identification of Acr-Aca loci
ARCHS4 RNA-seq processing scripts and web server pages.
StackStorm packs to automate sequencing center operations
script to automate Illumina bcl2fastq utility
A curated list of awesome Bioinformatics libraries and software.
A curated list of awesome deep learning applications in the field of computational biology
R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Command lines for the BIO-ML resources
Tools for bam file processing
Conda recipes for the bioconda channel.
:microscope: Path to a free self-taught education in Bioinformatics!
Docker container for bioinformatics tools and pipelines
Bioinformatics Workbook repository
Bioinformatics Docker Container
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A Python implementation of edgeR for differential expression analysis
Scripts and pipelines used in the generation of "An Egyptian Genome Reference"
A Tool to Annotate and Prioritize Exome Variants
flexible barcode and adapter removal
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Official code repository for GATK versions 4 and up
Manuals and examples
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
R kernel for Jupyter
UCSC Genome Browser source tree. Stable branch: "beta".
The second version of the Kraken taxonomic sequence classification system
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.