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.dotfiles

configuration files for bash, emacs, R, etc

.emacs.d

repository for all of my emacs packages and init scripts for easy configuration accross machines

bioconductor-resources

a repository of references materials, vignettes, scripts, tutorials for the bioconductor packages that I use for analyses. This was created to help organize my projects and prevent me from solving the same problem twice or rewriting code because I can't find it

biocworkshop

bioinformatics-resources

bioinformatics_bio360_spring2017

assignments, resources, code, and projects from an undgergrad level bioinformatics course using python

biol607-intro-to-biological-data-analysis

cheatsheets

chip-seq-analysis-resources-

docker-resources

gene-expression-secondary-analysis

Repository of R scripts for analysis of gene expression data

genomic-analyses-w-python

immuno_notes

Immunology-related bioinformatics data and tools

libraryquant

ngs-variant-analysis-training-2020

Adapted training for GATK 4.1.4.x

pic-sure-w-python

pic-sure-w-r

raspberrypi-device-setup

scripts and resources to setup Raspberry Pis (0,2,3,A,B+) for network auditing

scrna-seq_analysis_scripts

shinyapps

sysadminresources

System Administration and Installation Respirces

tailor

Tools to perform comparative differential expresion analysis of RNA-Seq data via HPCC

test

variantanalysisscripts

Several variant analysis workflows for different types of sequencing data