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Name: Agricultural Data Processing Pipeline

Type: Organization

Bio: High throughput sensor processing pipeline. Please start at the pinned Organization-Info repository.

Location: University of Arizona

Blog: https://agpipeline.github.io/

Agricultural Data Processing Pipeline's Projects

.github

repository for default community health files

agpipeline.github.io

Web site for GitHub related information for this organization

agpypeline

Python library of common classes and functions

alpha-template-lidar-plot

Transformer template for plot level lidar data analysis. Please read HOW_TO.md to start

atlana

Web UI for AgPipeline workflows

data

Issues and code specifically related to data curation and use

deprecated-base-docker-support

Implements Entry Point and provides a base docker image with transformer execution flow

drone-makeflow

Makeflow files for running drone workflows

drone-pipeline-environment

Implements Transformer class and provides docker images for the drone processing pipeline

issues-and-projects

Repository for issues and projects

openstack-terraform-nomad

Set up a Nomad cluster on OpenStack using Terraform

organization-info

Information on how to contribute this GitHub organization and related documents

paper-data

Contains the instructions and scripts on how to reproduce the results found in the Drone Processing Pipeline paper

pipeline-nomad-jobs

Nomad job specifications for the pipeline components

plot-base-rgb

Base code for RGB template support providing Transformer functionality

rstudio-fieldimager

FIELDimageR Dockerfile for the CyVerse VICE environment

template-rgb-plot

Transformer template for plot level RGB data analysis. Please read HOW_TO.md to start

template-transformer-simple

A template for creating transformers for multiple environments

transformer-betydb-csvupload

Uploads CSV files to a BETYdb instance (based upon TERRA REF computing-pipeline/extractors/betydb)

transformer-bin2tif

Moving to https:/github.com/uacic. Transforms RGB bin files to geo-referenced tiff (based upon TERRA REF extractors-stereo-rgb/bin2tif)

transformer-canopycover

Calculates canopy cover on soil masked images (based upon TERRA REF extractors-stereo-rgb/canopycover)

transformer-cleanmetadata

Moving to https:/github.com/uacic. Cleans Gantry generated metadata (formerly extractors-metadata/cleaner in TERRA REF)

transformer-envlog2netcdf

Moving to https:/github.com/uacic. Processes environmental logger stream data files into a netCDF (based upon TERRA REF extractors-environmental/envlog2netcdf)

transformer-fieldmosaic

Moving to https:/github.com/uacic. Creates an RGB field mosaic with Gantry images (formerly TERRA REF extractors-stereo-rgb/fieldmosaic)

transformer-flir2tif

Moving to https:/github.com/uacic. Converts the IR bin files to geo-referenced TIF (based upon TERRA REFextractors-multispectral/flir2tif)

transformer-geostream-csvupload

Loads CSV files to GeoStreams database instance (base upon TERRA REF computing-pipeline/extractors/geostreams)

transformer-hyperspectral

Moving to https:/github.com/uacic. Transforms raw imagery from 2D raster to 3D compressed netCDF (based upon TERRA REF extractors-hyperspectral)

transformer-irrigation_datparser

Moving to https:/github.com/uacic. Loads irrigation data into GeoStreams database (TERRA REF) instance (based upon TERRA REF extractors-environmental/irrigation_datparser)

transformer-las2height

Moving to https:/github.com/uacic. Calculates canopy height from las file (based upon TERRA REF extractors-3dscanner/las2height)

transformer-meantemp

Moving to https:/github.com/uacic. Calculates mean temperature on IR images (based upon TERRA REF extractors-multispectral/meantemp)

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Agricultural Data Processing Pipeline's Projects

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