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barcodeflow

Visualize how barcodes change in abundance between samples

bartender

Find and characterize barcoded viruses

biopython_workshop

Biopython: Work with biological sequence data in Python

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Modified for bioinformatics.

fabv_triclosan_tolerance_analysis

Analysis scripts for fabV & triclosan tolerance association paper

flupipeline

Automatically find the best reference for influenza NGS read mapping and find intra-host variants

ftpdataexchange

Python library for copy files to and from a remote server using FTP.

genegrouper

CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.

hotrocs

ROC curve area matrix and heat map

iguide_off_target_report_cd33

integrationfeatureheatmap

Calculate ROC for integration sites and genomic features

investigateintegrations

Workflows to investigate integration site distributions

r_phylogenetics_worshop

Using ggtree to build phylogenetic trees

variannnts

Create synthetic reads with specified variants (SNPs and INDELs)