adrianforsythe Goto Github PK

adrianforsythe

adrianforsythe.github.io

ancient-microbiome-smk

Ancient microbiome snakemake workflow

autoleague_espn

ESPN Fantasy Football Robot

biotestmine

An example InterMine - for demoing and testing

configs

Config files used to define parameters specific to compute environments at different Institutions

digs-tool

Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.

eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

ff-espn-api

ESPN Fantasy Football API. Works with ESPN's new v3 endpoint!

goosepaper

generate and deliver a daily newspaper to you or your remarkable tablet

grabb

GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using reference sequences and NGS data.

jekyll-lab-notebook

📓 A full-featured electronic lab notebook theme (with plugins!) for Jekyll

mag

Assembly and binning of metagenomes

mapdamage

mapDamage: tracking and quantifying damage patterns in ancient DNA sequences

mas

Manual Annotation Studio (MAS) is a web server which assists users in the process of identifying coding regions and determining the function of genes.

mcmaster_thesis_template

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

metagenomics-power-analyses-tutorial

Tutorial for doing power analyses for metagenomics.

mycotools

nbis-meta

A snakemake workflow for metagenomic projects

obsidian-amazingmarvin-plugin

Simple plugin for Amazing Marvin

parliament2

Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

resnap

Take screnshots of your reMarkable tablet over SSH

rmapy

FORK PARTY! A unofficial python module for interacting with the Remarkable Cloud.

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sexassign

Genetic sex determination using read dosage

starfish