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12s-rrna-metabarcoding

bioinfomatics-algorithms

Bioinformatics algorithm exercises

biotools

Standalone scripts that are useful for manipulating and analysing DNA sequence data

data-structures-and-algorithms

Data Structures and Algorithmic Heights

dimas_rrnanalysis_xxxx_2022

Code club project analyzing utilities of ASVs

drought_index

A project to practice reproducible research analysis while studying the state of drought around the world

flask-web-app

A simple Interface web App using Flask framework

genstats

Statistics course for JHU Genomic Data Science Sequence

idat2plink

A simple program to generate .vcf and plink format files from .idat files

jamu_authentification

kleborate

mikropml_rdemo

my-fastx-utility-tools

My python fastq and fasta utility tools

n-and-ng-calculation

Simple programs to calculate N and NG value from a fasta file of the SPAdes contigs output

pathogen-profiler

This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

smrnaseq

A small-RNA sequencing analysis pipeline

snakemake-intro

spikes_assessment

straitrazor

straitrazoronline

Script and associated files to run STRait Razor Online Shiny app for analysis of massively parallel sequencing data.

tb-profiler-webserver

tbdb

Standard database for the TBProfiler tool

tbprofiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data