Name: Anne Deslattes Mays
Type: User
Company: Science and Technology Consulting LLC
Bio: https://orcid.org/0000-0001-7951-3439 PhD Tumor Biology, MSc Computer Science, BSc Mathematics solving biological questions at scale in the cloud
Twitter: adeslat
Anne Deslattes Mays's Projects
This is the 2022 BioIT - World Hackathon GitHub repository for the NICHD Iterative Cluster Analysis working with Kids First and INCLUDE Open and Registered Tier Data
Alevin is released within Salmon - so this is Salmon v1.4.0
Alternative Splicing NextFlow Workflow - initially using rMATS
ATAC-seq peak-calling, QC and differential analysis pipeline
a container for bcftools https://github.com/samtools/bcftools#readme
Resurrecting multiple sequence alignment method used to analyze long read RNAsequencing data from PacBIo on Healthy Human Bone Marrow -- it begins with calling the open reading frames to translate the DNA to Protein sequence and ends with at time manual editing to align the sample specific sequence data.
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Code for reading in PacBio ToFU output and printing gene models
utilities to do analysis and comparisons between groups
Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
Building-A-CWL-Script
Building-A-Nextflow-Script
This is the repository for the Dockerfile made to containerize and make the package available for the tools in https://github.com/Magdoll/cDNA_Cupcake. The package is automatically built and pushed upon any push to the repository using GitHub actions.
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
combine-matrices-docker
Collection of classes offered - providing instruction surrounding community based workflows, such as nextflow as well as offering insights in using JupyterLab notebooks to perform analyses and generate publication ready figures.
Workflows to be run for Diagnostics on new and existing data
container for curl
deseq2-docker
Dockerfile repository for Bioinformatics
Use this template for Dockerfile creation
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Resources for the Pilot Online Course "Dry bench skills for Researchers"