adc0032 Goto Github PK

adc0032.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

au-bootcamp-git-intro

Git introduction for Auburn University Bioinformatics Bootcamp

bash_debugger_homework_4

bio_scripting_homework_3

Homework 3 for Scripting for Biologists course at Auburn University

blast_script

blobology

Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)

daphniagenomics19

testing out github with Bailey

decoupler_manuscript

Code to reproduce the results from decoupleR's manuscript

decouplerbench

Package to benchmark methods from decoupleR

dpulicaria_genomics

This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplified workflow/pipeline to run these analyses on a supercomputer and are separated into two parts, reference-guided genomic assembly and contamination screening.

ensleycochrist

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

genome-script-in-full

genomics_general

General tools for genomic analyses.

gngg_setup

Grab-N-Go Genomes Setup Information

grabngogenomes

Scripting for Biologists

homework_6

Homework 6 for Scripting for Biologists

iterm2-color-schemes

Over 230 terminal color schemes/themes for iTerm/iTerm2. Includes ports to Terminal, Konsole, PuTTY, Xresources, XRDB, Remmina, Termite, XFCE, Tilda, FreeBSD VT, Terminator, Kitty, MobaXterm, LXTerminal, Microsoft's Windows Terminal, Visual Studio, Alacritty

learnadvr

python-translation-exercise

Learning Python by translating RNA sequences.

python-translation-project

Learning Python by translating RNA sequences

random-scripts

Miscellaneous scripts I find useful

romim

R package for querying the OMIM database

rooted_bham

Community Project featuring local Birmingham Business Owners. Built from: »Feeling Responsive« is a free flexible theme for Jekyll built on Foundation framework.

sample_repo

sample repository for course github demos

sceloporusgenomics

scripting_for_biologists

Repo for all things homework and coding practice for course (Scripting for Biologists-Sp19) at Auburn University

scriptingproject

simplergraphs

Tutorial Inspired by Frank McCowan's (https://sites.harding.edu/fmccown/r/) website for Auburn University's Intro to Computational Biology

stats_club

Code from monthly stats club in the Lasseigne Lab

stringtie

Transcript assembly and quantification for RNA-Seq