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2021_viraltissueworkshop

adamklie.github.io

agp_exercise_analysis

Analysis of existing American Gut Project data on exercise frequency

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

beng182project

BENG 182 Protein Database Query Project

bimm185project

Microbial Profile Generation

bobs_toolbelt

A Python toolkit for bioinformatic research

bpnet-lite

This repository hosts a minimal version of a Python API for BPNet.

cagi6-prs-docker

Dockerized builds for CAGI6-PRS challenge

carter-lab-site

cellcommander

Common single cell analysis tasks made runnable with the command line

crispr-jamboree

2nd IGVF CRISPR-JAMBOREE

cse253_pa1

PA1 Logistic and Softmax Regression

cse253_pa4

PA4 Image Captioning

drpredict

Drug Response Predictor of Immune Checkpoint Therapy

enc4_mouse

Scripts to import ENCODE processed data for snRNA-seq experiments and snATAC-seq experiments to Seurat and ArchR objects, respectively.

encode_examples

A set of processed datasets downloaded from ENCODE for training models

eugene

Elucidating the Utility of Genomic Elements with Neural Nets

exrna_breast_cancer

Analysis of microbial sequences in exRNA for cancer prediction

fungal_endophthalmitis

Code repository for regular expression pipeline to analyze fungal endophthalmitis cases in MIMIC database

gene_program_evaluation

Evaluation framework for gene program inferred from single-cell omics data

predictmee

Predicting missing metadata with recurrent neural network (RNNs) based entity extraction

pytorch-vae-tutorial

A simple tutorial of Variational AutoEncoders with Pytorch

starter-hugo-academic

str_crazy

A neural network approach to eye color prediction

tangermeme

Biological sequence analysis for the modern age.

topic_grn_links_datasets

A companion repository to topic_grn_links for downloading and preprocessing data