Comments (2)
This appears to be a problem with the conda install. When I created a fresh python3 ve with a new pip3 install as well, then installed truvari via pip, things work as expected.
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Related Issues (20)
- `truvari collapse` with `--intra` option results in pysam throwing `TypeError: value expected to be scalar, given len=2` HOT 5
- One new annotation added by `truvari collapse` ? HOT 1
- Error when runnig `truvari bench` HOT 2
- Large increase in FNs on pysam v0.22.0 HOT 12
- Truvari bench hangs indefinitely HOT 3
- Pysam bug results in missing info field in output VCF file. HOT 1
- Truvari `refine` doesn't complete HOT 3
- Truvari refine fails when no regions to refine HOT 4
- TypeError, 'NoneType' and 'NoneType' HOT 2
- Duplication to Insertion doubt HOT 4
- Failure in pip installation HOT 2
- Question: Does truvari have a upper limit on the file size? How to speed up? HOT 2
- BED Region off-by-one error HOT 4
- Zero matches between base and comp HOT 4
- AttributeError: 'CollapsedCalls' object has no attribute 'consolidate' | version 4.2.1 HOT 4
- Calculate SNV HOT 7
- complex genotype problem HOT 3
- GT integrate HOT 1
- No TP or FP calls for CNV HOT 1
- merging different SV type? HOT 3
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