Comments (1)
Hi,
The pip command only installs external required packages. We haven't packaged truvari to be distributed through pip, yet.
You'll need to use git and download this repository and directly call python truvari.py
git clone https://github.com/spiralgenetics/truvari.git
If you want to use a specific version (recommended), use:
git checkout v0.4
from truvari.
Related Issues (20)
- remap error unrecognized argument `-a` HOT 2
- Collapsing results of one sample from multiple SV callers HOT 2
- Refine Silently killed. HOT 2
- Error with VCF file no sample found HOT 4
- Unresolved SVs (e.g. ALT=<DEL>) HOT 8
- `truvari collapse` with `--intra` option results in pysam throwing `TypeError: value expected to be scalar, given len=2` HOT 5
- One new annotation added by `truvari collapse` ? HOT 1
- Error when runnig `truvari bench` HOT 2
- Large increase in FNs on pysam v0.22.0 HOT 12
- Truvari bench hangs indefinitely HOT 3
- Pysam bug results in missing info field in output VCF file. HOT 1
- Truvari `refine` doesn't complete HOT 3
- Truvari refine fails when no regions to refine HOT 4
- TypeError, 'NoneType' and 'NoneType' HOT 2
- Duplication to Insertion doubt HOT 4
- Failure in pip installation HOT 2
- Question: Does truvari have a upper limit on the file size? How to speed up? HOT 2
- BED Region off-by-one error HOT 4
- Zero matches between base and comp HOT 4
- AttributeError: 'CollapsedCalls' object has no attribute 'consolidate' | version 4.2.1 HOT 4
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from truvari.