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2017-11-pythonpackaging

A minimalistic example of a python package

2018-04-newyorkersoundtracktospring

The notes of the New Yorker cover, Soundtrack to Spring (April 2018)

2018-10-mixedeffectsmodels

A tutorial for mixed effects models and their applications in bioinformatics and computational biology in drug discovery

201912-learn-echarts

Learning Apache Echarts, a javascript library for interactive and high-performance visualization in web browsers

2020-05-installandrunlanguagetools

Installation and running of LanguageTools on a local machine

2021-01-word-count

An instance of the word-count template provided by CodeRefinery

2021-07-parse-person

Parse persons for citation in R

20210530-hmm

HMM games

2023-06-ben-schnuppern

2023-07-collider

A simple example of collider's bias

2023-11-zukunftstag-2023

Zukunftstag 2023

2024-01-ggg-pythonatlibrary

Entwurf, Übungen, und Materielien für die Veranstaltung Python@Library im GGG Stadtbibliothek Basel, Januar 2024

2024-02-good-data-pay-compound-interests

A plot showing the point

2024-02-pk-parameters-visualized

2024-02-roche-schullabor-experio

2024-03-from-novel-targets-to-novel-therapeutics

Lecture on mechanistic, statistical, and causal modelling in drug discovery for Master Program Drug Sciences

acceleratedcpp

Codes and exercises of the book Accelerated C++ by Koenig and Moo

accio.github.io

Jitao David Zhang's blog

acciopy

A python package for matching lists of strings approximately

amber

Automated Modelling for Biological Evidence-based Research

amidd

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

analysing-scrnaseq-with-scanpy-and-besca

We explore how to use scanpy and besca to analyse single-cell sequencing data

bactopia

A flexible pipeline for complete analysis of bacterial genomes

basic_simulation_training

A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations (oriented towards molecular dynamics (MD)), providing some training itself and linking out to other helpful information elsewhere. The intent is that this provide information on the prerequisites which will be required for understanding/following many of the other "best practices" documents being prepared.

bioconda-recipes

Conda recipes for the bioconda channel.

bioqc

Detect tissue heterogeneity in gene expression data with BioQC

bioqc-example

The BioQC algorithm applied to a real expression profiling dataset

blitzgsea

Fast GSEA implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.

bookdown

Authoring Books and Technical Documents with R Markdown

causal_drug_discovery

Causal inference with Python and R