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Abi W.'s Projects

craft icon craft

Credible Refinement and Annotation of Functional Targets (CRAFT) is a pipeline for the calculation, annotation and visualisation of credible SNP sets.

cs186-db-projects icon cs186-db-projects

This repository clones the public template of CS186 database course projects.

digest icon digest

My contribution to an educational Python group project (created as part of an MSc course). Digest is part of a proteomics analysis pipeline that takes as input a bacterial genome and outputs a set of theoretical peptides from enzyme digests and relevant summary statistics.

msc-dissertation-scripts icon msc-dissertation-scripts

A set of useful scripts for processing data used in my MSc Dissertation project: "Evolutionary history of innate immunity in the human whipworm (Trichuris trichiura) and its contribution to host-pathogen interactions."

networkanalyse icon networkanalyse

My first Java project (created as part of an MSc course). NetworkAnalyse uses a GUI to allow users to create a network graph from an input file and calculates some of the graph's basic properties.

scvi icon scvi

Deep generative modeling for single-cell transcriptomics

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