Abolfazl (Abe)'s Projects
pseudobulking on an AnnData object
List of software/websites/databases/other stuff for genome engineering
A unified downloader+preprocessor for cancer genomics datasets
tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.
🧬 gget enables efficient querying of genomic reference databases
Genetic Interaction Networks and Pathway Modules
original code for the manuscript "Environmental challenge rewires functional connections among human genes"
Human endogenous retroviruses (HERV)
Integrated methods for meRIP-seq data analysis
PAGE algorithm run and downstream analysis
Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
A framework for preprocessing multiplexed CRISPR libraries
Precision Medicine Knowledge Graph (PrimeKG)
a python wrapper of the vis.js network visualization library with an additional ability to export static SVG
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
python implementation of the PAGE algorithm
Python implementation of TEISER also capable of using SHAPE structural probing data
QuantSeq FWD with UMIs RNA-seq analysis pipeline
The project for analyzing differential methylation of MeRIP-seq data
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability
RNA sequencing data analysis tutorials
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent