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ad_px_pipe

Pipeline for performing GWAS and PrediXcan in admixed populations, finding independently associated and eQTL colocalized signals, and mapping admixture using local ancestry estimations

comp483_miniproject

Mini-Project (COMP 483)

compbio_demo

Demonstration of pull requests, distributed workflows, etc.

divpop

Genetic architecture of gene expression traits across diverse populations

local_ancestry

Comparing LAMP-LD, RFMix, and ELAI

mesa_revisions

Scripts used in revisions of "Genetic architecture of gene expression traits across diverse populations"

predictdb_asian_hapmap

px_chol

Scripts used for Gene-Based Association Study for Lipid Traits in Diverse Cohorts Implicates BACE1 in Triglyceride Levels

px_yri_chol

Example quality control and GWAS pipeline using step names and a dbGaP YRI Height and Cholesterol cohort

running-predixcan

Scripts used in interpretation of the output from PrediXcan

sql-simplifier

Developing a Python wrapper for SQLite3 to take in parameters from the user and automate the queries to the database, producing .csv files ready for parsing

trans-predixcan