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academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

afcluster

alignment free clustering utility

altair

Declarative statistical visualization library for Python

ambigauss

Generic multi-peak fitter in Python

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

antipackage

Automagically import single file Python modules from GitHub.

asr

Python API for doing ancestral sequence reconstruction (extension of Lazarus)

augur

Pipeline components for real-time phylodynamic analysis

bioinformatics-demo

Demo we did because we're cool

bioinformatics-demo-2

biopython

Official git repository for Biopython (converted from CVS)

blog

Content for my blog.

business-card

A business card in LaTeX.

calpoly-hs-summer-intern-2020

calpolythesis

Senior Thesis from California Polytechnic State University

click

Python composable command line interface toolkit

covid-notebooks

Jupyter notebooks that analyze COVID-19 time series data

d3app

Boilerplate code for D3 application

d3app-example

Example D3 application using the boilerplate code from d3app

dask_emcee

Emcee in parallel using Dask.

decorate_tree

A python script that maps taxon information to a Nexus tree.

demo-git-conflict

Demo a git conflict.

demo-github-as-team

Demo of working on Github as a team

demo-repo

Demo repo

dendropy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

design

Design related materials for Project Jupyter

docker-demo-images

Demo images for use in try.jupyter.org and tmpnb.org

docker-jupyter-teaching

Temporary Jupyter Notebooks for scientific computing demos.

dotfiles

ds4e

Data Science for Everyone