xuewenwanguga Goto Github PK

gbru_planning

Planning of ongoing projects

gmata

Software GMATA for SSR mining, marker designing, genotyping, plot etc.

macrohapcaller

A bioinformatics tool in Java to Call and phase STR, SNP and InDel from NGS long read sequencing data

macrohapdb

The macrohap allele database and tools for variant alleles with SNP, STR and InDel from humans

macrohaphifi

the macrohaplotype alleles data from PacBio in-house HiFi reads for "long-read sequencing interpretates forensic DNA mixture"project , funding by Dept of Justice

pangenome

PanGenome analysis scripts

perj

Paired-End Reads Joining

prmne

The probability of Not Excluding a Random Man based on evidence alleles and population databases

rna-seq_analysis_r

seqreadsprocessing

Tools for short and long next generation sequencing reads processing

snpap

A bioinformatic tool to calculate the Phred-scaled likelihood PL of snp alleles

strphaser

The novel bioinformatics tool for building phased STR allelic sequences from VCF file

trcaller

A breakthrough bioinformatics tool TRcaller in Java: the fastest and most accurate STR/SSR/TR genotyping tool

usat

Universal STR Allele Toolkit (USAT) for viewing and comparison

varseqstitcher

A novel bioinformatics tool in Java to build phased long alleles of STR+SNP+InDel from VCF file