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michaelsnelson's Projects

3d_zebrafish icon 3d_zebrafish

Set of scripts and notebooks for processing 3D zebrafish volumes in Fiji and Napari

aqlm_fiji_2023 icon aqlm_fiji_2023

Set of files related to presenting an introduction to Fiji and associated workshop at AQLM.

bigstitcher icon bigstitcher

ImgLib2/BDV implementation of Stitching for large datasets

byol-pytorch icon byol-pytorch

Usable Implementation of "Bootstrap Your Own Latent" self-supervised learning, from Deepmind, in Pytorch

dac-pdac icon dac-pdac

Discriminative Attribution from Counterfactuals

multiview-reconstruction icon multiview-reconstruction

Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

n2v_surgery icon n2v_surgery

This is the implementation of Noise2Void training. Adjusting config to match stardist3D

slim-stitching icon slim-stitching

Jan 2022 stitching project for FLIM data using Fiji's Grid/Collection stitcher and IJM scripts

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