jinyuan sun's Projects
Calculate the RMSD between two antibody structure (including nanobody and antibody).
Instruct-tune LLaMA on consumer hardware
Open source code for AlphaFold.
Identifying peptide-receptor interactions using AlphaFold-Multimer
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
Python3 translation of AutoDockTools
automated simple MD with gromacs
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
Official git repository for Biopython (originally converted from CVS)
Computer aided proximal decaging as a universal strategy for temporal protein activation
predicting peptide-protein interactions
Chai-1, SOTA model for biomolecular structure prediction
Ask anything about enzymes
Annotate C(CAZy)M(MEROPS)P(PHI)P(P450) for fungi.
A maintained list of tools for computational protein design
Official repo for consistency models.
DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
Docs for ddgscan
An installable library to get DeepET representations.
A list of deep learning implementations in biology
Implementation of Denoising Diffusion Probabilistic Model in Pytorch
Design and Engineering of Protein and Enzymes by Computational Tools
a pytorch versioin of DLPacker