Andrea Guarracino's Projects
PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
Curriculum Vitae
convert CHAIN format to PAF format
Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata
convert variation graph alignments to coverage maps over nodes
Pangenomic assessment of HG002 assemblies
Human Pangenome Project
implicit pangenome graph
hard mode all genomes alignment
A fast approximate aligner for long DNA sequences
A genomic k-mer counter (and sequence utility) with nice features.
Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
convert PAF format to CHAIN format
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Material for the Reference Graph Pangenome Data Analysis Hackathon 2023, November 13-17 in Cape Town, South Africa
RDF library implemented in Rust
Line-by-line converter from GFA to RDF (turtle)
Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.