3dgenomes Goto Github PK
Name: 3DGenomes
Type: Organization
Bio: Tools for modeling and analyzing 3D genomes.
Blog: http://3dgenomes.org/
Name: 3DGenomes
Type: Organization
Bio: Tools for modeling and analyzing 3D genomes.
Blog: http://3dgenomes.org/
list of notebooks for 4 days course on Hi-C data handling and 3D modeling of chromatin
A ThreeJS 3D Viewer Web Component composed with (Google's) Polymer
Angular module implementing D3
Angular module implementing THREEjs
Resolution-independent normalization of Hi-C data
Collective variables module for molecular simulation and analysis programs
Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/
Convolutional Neural Network to identify loops from 3C-based experiments
METALoci: spatially auto-correlated signals in 3D genomes
Example of the analysis workflow of one image produced by OligoFISSEQ. All the files needed are contained in this repository
Code example of METALoci applied to H3K27ac for the Sox9 mouse locus during development (E13.5)
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
TADdyn is a Python library that allows to model and explore single or time-series 3C-based data.
3D Genome Browser
A 3D viewer for TADbit models
TADpole is a computational tool designed to identify and analyze the entire hierarchy of topologically associated domains (TADs) in intra-chromosomal interaction matrices. This is the stable version of TADpole. You can find the development version at
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.