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anaic-analysis

A Novel Anti-Influenza Combined Therapy Assessed by Single Cell RNA-sequencing (analysis notebooks)

anaic-filtered-matrices

bayex

Bayesian networks for finitely-supported distributions

boost-python-examples

Some examples for the use of boost::python

bpcqueue

A producer-aware MPMC bounded queue in C++11

burst

An ultrafast optimal aligner for mapping large NGS data to large genome databases.

bwapy

Python bindings to bwa mem

camunda-client

Camunda External Task Client in Python

cnpy

library to read/write .npy and .npz files in C/C++

cosmos2

Python Scientific Pipeline Management System

ctxsugar

Context-aware and context-providing mixins in Python

cubature

Adaptive integration routines by Steven G. Johnson with an automated build system

dotfiles

common configuration files for bash, vim, git e.t.c.

econ-project-templates

A collection of templates for economics projects using programs in various languages (Stata, Matlab, Python, R, Perl, ...), tied together by Waf.

ecos

A lightweight conic solver for second-order cone programming.

elixir

Elixir is a dynamic, functional language designed for building scalable and maintainable applications

fpricing

Vanilla and spread option pricing with affine models

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hice

Lean and fast mapper for Hi-C data based on minimap2

ilya-kolpakov.github.io

Site hosted on github.io

jsondate

JSON with datetime handling

jupyter-flake

jupyter server flakes with pluggable kernels

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mofapy2-env

A python env with mofapy2 package packaged as a nix flake

moody-camel-s-concurrentqueue

A fast multi-producer, multi-consumer lock-free concurrent queue for C++11

nixpkgs

Nix Packages collection

optparse

C++ implementation of optparse (header-only fork of https://github.com/weisslj/cpp-optparse)

pyiqfeed

Python LIbrary for reading DTN's IQFeed

pylance-release

Documentation and issues for Pylance

pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano