Comments (2)
@biobug16 You'll get "MissingLibrary" in the name of the output folder in some cases when the original run of the pipeline was not able to determine a certain name for the input data. You can ignore this -- the fastq in the output directory should be fine.
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@biobug16 You'll get "MissingLibrary" in the name of the output folder in some cases when the original run of the pipeline was not able to determine a certain name for the input data. You can ignore this -- the fastq in the output directory should be fine.
Then how do you set a certain name for the directory of output data? We don't want a missing library output directory with some random letters.
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Related Issues (20)
- The bam data processed by bamtofastq is different from the original FASTQ file. HOT 14
- Reproducing cellranger count from bamtofastq HOT 1
- cellranger-arc 1.0.0
- Output directory doesn't exist error HOT 5
- Running bamtofastq on a subset of CellRanger bam HOT 1
- Type = TenX
- Post-error behaviour: bamtofastqerror: Didn't find both records for a paired end read. Is your BAM file complete? HOT 1
- Directly turn bam file to UMI count?
- How to set sample name of fastq file output
- bamtofastq depends on bxindex, which is part of Long Ranger
- Is there a way to skip the error and continue converting? HOT 1
- bamtofastqerror: Not a valid read pair: false, false
- Make the tool work with "cellranger vdj" bam outputs HOT 1
- Different
- Does bamtofastq work properly for bam files from STARsolo? HOT 4
- bamtofastq generated 3 reads with triplicate of each reads HOT 2
- Release 1.4.2/1.5.0 HOT 1
- Option --relaxed not working properly for bamtofastq-1.4.1 HOT 2
- Strange read-splitting behaviour HOT 3
- Sort paired end .bam before run bamtofastq?
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