0820ll Goto Github PK

.bash_profile

The environment commands in file .bash_profile

0820ll

Config files for my GitHub profile.

996.icu

Repo for counting stars and contributing. Press F to pay respect to glorious developers.

albacore

Albacore is a professional quality suite of Rake tasks for building .NET or Mono based systems.

albacore-1

Dockerfile for the Albacore basecaller from Oxford Nanopore

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-java

A curated list of awesome frameworks, libraries and software for the Java programming language.

bigbwa

BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).

biopython

Official git repository for Biopython (converted from CVS)

bowtie

An ultrafast memory-efficient short read aligner

bowtie2

A fast and sensitive gapped read aligner

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

bwt-implementation

An implementation of the Burrows-Wheeler Transform in Java

centrifuge

Classifier for metagenomic sequences

comparative-annotation-toolkit

config_converter

corejavavolume1

用于练习Java核心技术卷I（第10版）中的代码

cpdf-binaries

PDF Command Line Tools binaries for Linux, Mac, Windows

cramtools

CRAM format specification and java API for read data.

daligner

Find all significant local alignments between reads

data_visualization

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

doc-annovar

Documentation for the ANNOVAR software

falcon

FALCON: experimental PacBio diploid assembler

fast5-to-fastq

A simple tool for extracting reads from Oxford Nanopore fast5 files

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

feature

fm-index

FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental results.

fm_index_java

FM_index algorithm coded by Java

gatk

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository