Sebastian R's Projects
bedtools - the swiss army knife for genome arithmetic
Conda recipes for the bioconda channel.
Cubic spline approximation (smoothing)
Tools to process and analyze deep sequencing data.
ECCB2020 tutorial: Using Deep Learning For Image and Sequence Analysis
Functional analysis of single-cell transcriptomics
Simple python to lazily one-hot encode fasta files using multiple processes.
commandline tool for fast computation and correction of GC biases in WGS DNA datasets from liquid biopsy samples taking the fragment length into account
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning.
Minimal cookiecutter template for Python packages
Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course
A game theoretic approach to explain the output of any machine learning model.
This is the development home of the workflow management system Snakemake. For general information, see
This is the development home of the Snakemake wrapper repository, see
Snakemake tutorial based on the official documentation of snakemake
Python extension for Visual Studio Code