silask Goto Github PK

16s-dada2

Snakemake pipeline for amplicon sequencing using dada2

2018_scworkshop

2022-search-sra-with-mastiff

Tools and utilities for making use of mastiff

abinner

academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

academic-pandoc-template

Write beautiful academic texts with the distraction-free Pandoc Markdown.

anadama2

AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).

andi

♥ Efficient Estimation of Evolutionary Distances

article-downloader

Uses publisher APIs to programmatically retrieve large amounts of scientific journal articles for text mining.

atlas

:earth_americas: ATLAS - a framework for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data.

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

bbcfutils

Collection of stand-alone tools

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

bioconda-recipes

Conda recipes for the bioconda channel.

biometadb

Use biological data to generate SQL database schema

bioservices

Access to Biological Web Services from Python.

blog-assets

Source codes for some posts on my blogs.

bubbleplot

checkm2

Assessing the quality of metagenome-derived genome bins using machine learning

clusterprofile_hmi

Snakemake profile for cluster submission of Atlas on almost any cluster system

cmmg_tools

Code for analysis of CMMG

codaseq

Functions for compositional analysis of high throughput sequencing

cruzdb

python access to UCSC genomes database

curatedmetagenomicdataanalyses

Analyses in R and Python Using curatedMetagenomicData

curatedmetagenomicdatacuration

Sample Metadata Curation for curatedMetagenomicData

cytoscape-automation

Collection of scripts that include programmatic io and control of Cytoscape

d3

A JavaScript visualization library for HTML and SVG.

d3-collapsible-tree-demo

Example of displaying data in a collapsible tree using D3.js

das_tool

DAS Tool